Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_901

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9268 and 9269 are separated by 176 nucleotides9269 and 9270 are separated by 349 nucleotides mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2,146,982 to 2,149,051 9268 mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284 9269 mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672 9270

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,148,254 - 9268 mRNA_900 0.61 -0.1
2,148,524 - 9268 mRNA_900 0.74 +0.2
2,148,549 - 9268 mRNA_900 0.76 -0.6
2,148,673 + 9268 mRNA_900 0.82 +0.5
2,148,676 - 9268 mRNA_900 0.82 +1.3
2,148,687 - 9268 mRNA_900 0.82 -0.9
2,148,843 + 9268 mRNA_900 0.90 +0.1
2,148,981 - +0.4
2,149,000 + +0.7
2,149,025 + +0.7
2,149,131 + -0.0
2,149,134 - +1.0
2,149,143 + +2.3
2,149,147 + +1.0
2,149,148 - +0.3
2,149,152 + +0.8
2,149,189 - -1.1
2,149,191 + +1.7
2,149,198 + -0.7
2,149,208 - +2.0
2,149,269 + +0.1
2,149,272 + +2.4
2,149,301 - -0.2
2,149,301 - -1.1
2,149,305 - +1.9
2,149,313 + -0.2
2,149,390 - -0.6
2,149,429 + +0.7
2,149,442 - 9269 mRNA_901 0.10 +0.4
2,149,638 + 9269 mRNA_901 0.20 -1.4
2,149,715 - 9269 mRNA_901 0.24 +0.3
2,149,894 + 9269 mRNA_901 0.32 +0.6
2,149,927 - 9269 mRNA_901 0.34 -0.6
2,150,050 + 9269 mRNA_901 0.40 +0.1
2,150,192 - 9269 mRNA_901 0.47 +1.6
2,150,268 - 9269 mRNA_901 0.51 +1.8
2,150,297 - 9269 mRNA_901 0.52 +1.1
2,150,315 + 9269 mRNA_901 0.53 +0.4
2,150,315 + 9269 mRNA_901 0.53 +0.3
2,150,315 - 9269 mRNA_901 0.53 +0.3
2,150,325 + 9269 mRNA_901 0.53 +0.6
2,150,339 + 9269 mRNA_901 0.54 -0.0
2,150,349 + 9269 mRNA_901 0.54 +0.5
2,150,349 - 9269 mRNA_901 0.54 -0.3
2,150,540 + 9269 mRNA_901 0.64 +1.1
2,150,894 + 9269 mRNA_901 0.81 +0.4
2,151,015 - 9269 mRNA_901 0.87 +1.3
2,151,022 - 9269 mRNA_901 0.87 +1.2
2,151,040 - 9269 mRNA_901 0.88 +1.0
2,151,079 - +1.3
2,151,331 - +0.7
2,151,345 + +0.4
2,151,356 - +0.9
2,151,374 - +0.7
2,151,404 - -1.0
2,151,415 + +1.0
2,151,445 - +0.7
2,151,525 + +0.7
2,151,620 - +0.6
2,151,627 + +0.8
2,151,799 - -0.8
2,151,811 + -0.5
2,151,812 + +0.5
2,151,857 + +2.7
2,151,978 - +0.6
2,152,007 - -0.9
2,152,081 + 9270 mRNA_902 0.11 -0.2

Or see this region's nucleotide sequence