Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_903

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9270 and 9271 are separated by 285 nucleotides mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672 9270 mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725 9271

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,155,485 + -0.1
2,155,681 - +0.7
2,155,769 - +0.1
2,155,914 + +2.3
2,156,047 - 9271 mRNA_903 0.12 +2.0
2,156,089 + 9271 mRNA_903 0.17 +0.3
2,156,117 + 9271 mRNA_903 0.21 -0.2
2,156,356 - 9271 mRNA_903 0.52 -0.1
2,156,375 + 9271 mRNA_903 0.54 +0.8
2,156,678 - +0.5
2,156,802 - +0.1
2,156,921 - -2.0
2,156,924 + +0.0
2,156,941 + +0.1
2,156,957 - +1.1
2,157,098 - +0.5
2,157,210 + -0.7
2,157,231 + +0.3
2,157,273 + -0.8
2,157,311 + -0.6
2,157,357 - +1.0
2,157,379 - -0.2
2,157,391 - +1.1
2,157,392 + +2.0
2,157,397 - +1.4
2,157,400 - +1.4
2,157,423 + +0.7
2,157,450 - +1.1
2,157,523 + +2.6
2,157,542 + +2.3
2,157,553 + +0.4
2,157,590 - +1.8
2,157,681 - +0.1

Or see this region's nucleotide sequence