Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
1 + -0.1
1 + +0.3
1 + +1.2
1 + +1.3
1 + +1.5
2 + +0.7
2 + +0.5
5 + -0.3
18 + -0.1
30 + +1.0
37 + +0.1
37 + +2.2
41 + +0.2
42 + +0.7
44 + -0.2
49 + +0.2
49 + +1.9
50 + +0.5
54 + +0.5
58 - +1.3
60 - +0.0
60 + +0.4
60 - -0.6
61 - +0.8
61 + -1.7
63 + +1.5
63 + -0.7
63 + -0.1
63 + +2.1
63 + +1.4
63 + +0.2
64 + +0.4
66 - -0.3
66 + -0.8
70 + +1.0
70 + -0.5
70 - +0.0
71 + -0.4
73 + +0.5
75 - -1.2
77 - -3.3
78 + -1.4
78 - -1.0
78 + -0.7
78 + +0.3
78 + -0.3
78 + +0.1
78 + +1.0
78 + -0.6
78 + -0.5
79 + +0.4
81 - +0.0
81 - +3.1
82 + +0.4
85 + +1.6
104 + +0.4
126 + -0.0
126 + -1.7
128 - +2.3
135 + +0.7
142 + -0.3
150 + +2.0
154 + -0.6
157 + -0.6
171 - -0.3
171 + -0.2
172 + -0.3
172 + +1.2
175 - +0.1
176 - +0.8
177 - +1.7
177 - +0.2
191 - +0.1
192 + +1.4
192 + +0.2
192 + +0.5
193 + -1.4
193 + -0.3
193 + +0.9
198 - +0.1
218 + -0.0
225 + -0.7
235 + +0.5
242 + +1.7
263 - -1.8
293 + +0.9
303 + -1.1
333 - -1.1
339 - -2.5
348 + +0.8
349 + -1.9
377 - +0.5
381 - +0.6
469 + -3.6
487 - 9298 mRNA_930 0.10 +0.5
722 + 9298 mRNA_930 0.29 +0.4
1,641 - +0.3
1,656 - -0.4
1,768 - +1.2
1,778 - +0.7
1,794 + -0.5

Or see this region's nucleotide sequence