Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_937

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9305 and 9306 are separated by 456 nucleotides mRNA_937: 9305 - KOG1721 FOG Zn-finger, at 19,341 to 20,725 9305 mRNA_938: 9306 - Hypothetical Protein, at 21,182 to 22,697 9306

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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18,343 - -0.2
18,347 + +2.6
18,349 + -0.6
18,359 + +0.9
18,361 + +0.6
18,460 - -1.9
18,486 - +1.0
18,492 - +0.7
18,511 - +1.4
18,621 - +1.8
18,621 - +0.0
18,725 - +0.9
18,735 + +0.4
18,750 - +1.8
18,765 - +0.4
18,774 - +0.2
18,779 - +1.1
18,941 + +1.5
18,954 - +0.5
19,070 + -0.2
19,188 - +1.6
19,201 - +0.8
19,220 + +0.7
19,226 + +0.1
19,228 - +0.0
19,231 + +2.6
19,240 - +0.1
19,327 + +2.5
19,382 - -0.9
19,795 - 9305 mRNA_937 0.33 +0.3
19,849 - 9305 mRNA_937 0.37 -0.7
19,970 + 9305 mRNA_937 0.45 +0.4
20,041 - 9305 mRNA_937 0.51 +1.1
20,204 - 9305 mRNA_937 0.62 +0.8
20,491 - 9305 mRNA_937 0.83 +0.0
20,492 - 9305 mRNA_937 0.83 -0.8
20,494 + 9305 mRNA_937 0.83 -0.1
21,006 + +1.2
21,108 + +0.1
21,266 + +1.1
21,305 - +0.7
21,436 + 9306 mRNA_938 0.17 -1.2
21,543 - 9306 mRNA_938 0.24 +1.3
21,568 - 9306 mRNA_938 0.25 +0.7
21,587 - 9306 mRNA_938 0.27 -0.3
21,588 + 9306 mRNA_938 0.27 +0.3

Or see this region's nucleotide sequence