Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1148

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9515 and 9516 are separated by 459 nucleotides9516 and 9517 are separated by 701 nucleotides mRNA_1147: 9515 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 515,844 to 517,256 9515 mRNA_1148: 9516 - K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e, at 517,716 to 518,527 9516 mRNA_1149: 9517 - Hypothetical Protein, at 519,229 to 520,018 9517

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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516,773 + 9515 mRNA_1147 0.66 +0.3
516,892 + 9515 mRNA_1147 0.74 +0.4
517,174 + -0.2
517,181 - +1.9
517,341 + +2.3
517,348 + +0.9
517,360 - +0.2
517,365 + +0.1
517,619 - +0.5
517,623 - +0.9
517,631 - -0.3
517,637 - +0.3
517,637 + +1.0
517,651 + +0.1
517,652 - +1.1
517,660 - +0.4
517,670 + -3.1
518,576 + +1.7
518,582 + +0.9
518,663 - +0.5
518,750 + -0.4
518,869 - -3.1
519,169 - -0.6
519,278 - +0.6
519,441 + 9517 mRNA_1149 0.27 -0.3
519,482 - 9517 mRNA_1149 0.32 +0.5

Or see this region's nucleotide sequence