Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1268

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9635 and 9636 are separated by 364 nucleotides9636 and 9637 are separated by 261 nucleotides mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793,138 to 795,041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795,406 to 796,307 9636 mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796,569 to 799,890 9637

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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794,503 + 9635 mRNA_1267 0.72 -3.1
794,534 + 9635 mRNA_1267 0.73 -4.4
794,652 - 9635 mRNA_1267 0.80 -1.1
794,860 + -3.3
795,071 + +2.1
795,075 + +1.5
795,102 + -0.2
795,113 + +0.1
795,122 - +0.9
795,130 + +0.7
795,131 - +0.0
795,144 - -0.4
795,229 + +0.3
795,232 - +0.8
795,257 - +0.8
795,274 + +0.1
795,332 - +2.6
795,351 + -0.1
795,446 - +0.1
795,467 + +0.4
795,563 - 9636 mRNA_1268 0.17 +2.8
795,874 - 9636 mRNA_1268 0.52 +1.0
795,916 - 9636 mRNA_1268 0.57 +0.1
795,984 + 9636 mRNA_1268 0.64 -0.3
796,039 + 9636 mRNA_1268 0.70 +0.3
796,170 - 9636 mRNA_1268 0.85 +0.8
796,274 + +0.3
796,275 - +0.5
796,310 + +0.4
796,316 + +0.7
796,356 + -1.3
796,591 - +0.7
796,597 + +0.2
796,615 - -1.1
796,751 + -0.6
796,771 + +0.0
796,840 + +0.7
797,178 - 9637 mRNA_1269 0.18 -0.1

Or see this region's nucleotide sequence