Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1297

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9664 and 9665 are separated by 521 nucleotides9665 and 9666 are separated by 302 nucleotides mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856,418 to 857,945 9664 mRNA_1297: 9665 - K17292 TBCA tubulin-specific chaperone A, at 858,467 to 858,877 9665 mRNA_1298: 9666 - HMMPfam-Ubiquitin-2 like Rad60 SUMO-like-PF13881,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SUPERFAMILY--SSF54236, at 859,180 to 859,998 9666

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
858,011 - -0.4
858,017 - -2.4
858,035 + +0.7
858,039 - +0.2
858,057 - +0.8
858,064 + +0.6
858,078 - -0.2
858,080 - -0.3
858,081 + +1.1
858,089 + -0.6
858,097 + -0.7
858,102 - +0.3
858,107 - +1.5
858,108 + -0.2
858,108 + +0.1
858,112 - +0.1
858,152 + +0.6
858,202 + +0.1
858,655 + 9665 mRNA_1297 0.46 +2.1
858,790 + 9665 mRNA_1297 0.79 -0.8
858,931 - -1.3
858,934 + +0.1
858,968 + +0.8
858,984 - -0.3
859,110 - +0.6
859,137 - -0.2
859,245 + +0.3
859,415 - 9666 mRNA_1298 0.29 +0.0
859,421 - 9666 mRNA_1298 0.29 +0.7
859,568 - 9666 mRNA_1298 0.47 -0.4
859,600 - 9666 mRNA_1298 0.51 +1.2
859,615 + 9666 mRNA_1298 0.53 +0.7
859,761 - 9666 mRNA_1298 0.71 -0.7
859,763 + 9666 mRNA_1298 0.71 -0.0
859,764 - 9666 mRNA_1298 0.71 -0.8
859,769 + 9666 mRNA_1298 0.72 +2.6
859,769 - 9666 mRNA_1298 0.72 +0.8
859,779 + 9666 mRNA_1298 0.73 +0.1
859,784 - 9666 mRNA_1298 0.74 -0.8
859,794 + 9666 mRNA_1298 0.75 -1.1
859,804 + 9666 mRNA_1298 0.76 +1.0
859,821 + 9666 mRNA_1298 0.78 -0.3
859,845 + 9666 mRNA_1298 0.81 +0.4
859,846 - 9666 mRNA_1298 0.81 +1.3
859,851 - 9666 mRNA_1298 0.82 +0.8
859,854 - 9666 mRNA_1298 0.82 +0.3
859,856 + 9666 mRNA_1298 0.83 -0.9
859,857 - 9666 mRNA_1298 0.83 +0.2
859,860 + 9666 mRNA_1298 0.83 +1.1
859,862 + 9666 mRNA_1298 0.83 +2.9
859,865 - 9666 mRNA_1298 0.84 +0.2
859,867 + 9666 mRNA_1298 0.84 -0.0
859,870 - 9666 mRNA_1298 0.84 +0.0
859,872 + 9666 mRNA_1298 0.84 +0.1
859,872 + 9666 mRNA_1298 0.84 -1.9

Or see this region's nucleotide sequence