Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1417

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9785 and 9786 are separated by 633 nucleotides mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227,247 to 228,373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229,007 to 229,464 9786

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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226,307 - -0.1
226,754 - +2.2
226,894 + -0.1
226,908 + +1.7
227,006 - +0.6
227,058 + +0.3
227,350 - +1.4
227,813 - 9785 mRNA_1417 0.50 -0.1
228,236 + 9785 mRNA_1417 0.88 -3.3
228,244 + 9785 mRNA_1417 0.88 +1.6
228,390 + -1.3
228,529 + +0.2
228,535 + +1.6
228,559 + +0.4
228,832 - -0.3
228,961 - +0.5
228,987 - +0.4
229,106 + 9786 mRNA_1418 0.22 +0.3
229,114 + 9786 mRNA_1418 0.23 +0.4
229,246 + 9786 mRNA_1418 0.52 +0.6

Or see this region's nucleotide sequence