Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1437

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9804 and 9805 are separated by 180 nucleotides mRNA_1436: 9804 - BLAST Stil protein [Mus musculus], at 275,980 to 277,394 9804 mRNA_1437: 9805 - K01526 E3.6.1.42 guanosine-diphosphatase, at 277,575 to 279,045 9805

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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276,969 + 9804 mRNA_1436 0.70 -0.4
276,969 + 9804 mRNA_1436 0.70 +0.5
277,099 - 9804 mRNA_1436 0.79 -2.4
277,110 + 9804 mRNA_1436 0.80 +1.0
277,274 - +0.2
278,172 - 9805 mRNA_1437 0.41 -0.9
278,846 - 9805 mRNA_1437 0.86 +0.1
279,427 - +0.7
279,457 + +0.0
279,607 + +2.6
279,617 + +0.9
279,763 + +0.7
279,768 + -0.3

Or see this region's nucleotide sequence