Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1501

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9868 and 9869 are separated by 231 nucleotides9869 and 9870 are separated by 603 nucleotides mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039 9868 mRNA_1501: 9869 - Hypothetical Protein, at 459,271 to 459,744 9869 mRNA_1502: 9870 - HMMPfam-Fungal specific transcription factor domain-PF04082,SUPERFAMILY--SSF57701, at 460,348 to 464,473 9870

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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458,319 + +0.0
458,335 - -0.4
458,775 - 9868 mRNA_1500 0.66 +0.6
459,070 - -0.6
459,183 + -2.5
459,198 - +0.7
459,205 - -1.1
459,209 + +1.6
459,216 - +0.4
459,225 + +0.0
459,243 - +2.0
459,243 - +0.5
459,244 - -0.3
459,245 - +0.9
459,256 - +0.4
459,257 + +1.2
459,270 - -0.2
459,313 - +0.5
459,326 + 9869 mRNA_1501 0.12 +0.3
459,329 + 9869 mRNA_1501 0.12 +0.9
459,339 - 9869 mRNA_1501 0.14 +0.0
459,342 + 9869 mRNA_1501 0.15 +0.4
459,351 + 9869 mRNA_1501 0.17 +1.3
459,360 + 9869 mRNA_1501 0.19 -0.7
459,360 + 9869 mRNA_1501 0.19 +0.3
459,461 - 9869 mRNA_1501 0.40 +0.4
459,468 - 9869 mRNA_1501 0.42 +0.3
459,471 - 9869 mRNA_1501 0.42 -0.4
459,478 + 9869 mRNA_1501 0.44 +0.7
459,482 - 9869 mRNA_1501 0.45 -0.1
459,482 - 9869 mRNA_1501 0.45 +0.4
459,485 + 9869 mRNA_1501 0.45 -0.5
459,487 - 9869 mRNA_1501 0.46 +0.4
459,488 - 9869 mRNA_1501 0.46 -0.8
459,488 + 9869 mRNA_1501 0.46 +1.7
459,488 + 9869 mRNA_1501 0.46 -0.4
459,492 - 9869 mRNA_1501 0.47 +0.5
459,504 + 9869 mRNA_1501 0.49 +0.7
459,532 + 9869 mRNA_1501 0.55 +3.1
459,633 - 9869 mRNA_1501 0.76 -0.5
459,639 - 9869 mRNA_1501 0.78 -0.2
459,752 - -0.5
459,771 + +1.2
459,771 - -0.5
459,797 - +0.7
459,797 - -0.3
459,812 + -0.7
459,815 + +0.7
459,839 - +0.1
459,891 + -0.1
459,959 - +2.1
459,962 + -0.7
460,067 + -0.8
460,114 + +0.3
460,127 - +0.0
460,165 - +1.8
460,213 + -1.5
460,244 + +0.6
460,371 + +1.2

Or see this region's nucleotide sequence