Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1628

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9995 and 9996 are separated by 207 nucleotides9996 and 9997 are separated by 791 nucleotides mRNA_1627: 9995 - K18551 SDT1 pyrimidine and pyridine-specific 5'-nucleotidase, at 751,734 to 753,010 9995 mRNA_1628: 9996 - Hypothetical Protein, at 753,218 to 753,980 9996 mRNA_1629: 9997 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 754,772 to 756,288 9997

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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752,287 - 9995 mRNA_1627 0.43 -2.4
753,045 + +1.2
753,046 - -0.1
753,203 + -0.3
753,207 + +2.3
753,218 + +0.7
753,219 - -0.5
753,236 - +1.1
753,507 + 9996 mRNA_1628 0.38 -0.6
753,819 - 9996 mRNA_1628 0.79 -0.2
754,233 + +0.2
754,535 + +0.4
754,686 + -0.1
754,686 - +0.8

Or see this region's nucleotide sequence