Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1646

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10013 and 10014 are separated by 334 nucleotides mRNA_1645: 10013 - Hypothetical Protein, at 795,092 to 795,670 10013 mRNA_1646: 10014 - KOG2182 Hydrolytic enzymes of the alpha/beta hydrolase fold, at 796,005 to 798,167 10014

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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795,237 - 10013 mRNA_1645 0.25 +0.5
795,797 + -1.2
795,964 - +0.9
795,978 + -0.7
795,979 + -1.5
795,991 + -0.0
796,139 + -2.0
796,261 + 10014 mRNA_1646 0.12 +0.5
796,432 - 10014 mRNA_1646 0.20 -2.6
796,470 - 10014 mRNA_1646 0.21 +0.1
796,885 + 10014 mRNA_1646 0.41 -0.9
797,394 - 10014 mRNA_1646 0.64 -0.4
797,394 + 10014 mRNA_1646 0.64 +1.7
799,032 + +0.3

Or see this region's nucleotide sequence