Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1678

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10045 and 10046 are separated by 133 nucleotides10046 and 10047 are separated by 89 nucleotides mRNA_1677: 10045 - K15620 GOLPH3, GPP34 golgi phosphoprotein 3, at 868,769 to 870,335 10045 mRNA_1678: 10046 - K09498 CCT6 T-complex protein 1 subunit zeta, at 870,469 to 873,019 10046 mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873,109 to 875,707 10047

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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869,520 - 10045 mRNA_1677 0.48 -0.6
869,651 - 10045 mRNA_1677 0.56 +1.4
869,780 - 10045 mRNA_1677 0.65 -0.0
869,786 + 10045 mRNA_1677 0.65 -1.1
869,809 + 10045 mRNA_1677 0.66 -0.5
869,934 - 10045 mRNA_1677 0.74 +1.7
869,966 - 10045 mRNA_1677 0.76 +0.7
869,975 + 10045 mRNA_1677 0.77 +0.2
869,987 + 10045 mRNA_1677 0.78 +1.2
869,990 - 10045 mRNA_1677 0.78 +0.9
869,993 - 10045 mRNA_1677 0.78 -0.7
870,106 - 10045 mRNA_1677 0.85 +0.8
870,108 + 10045 mRNA_1677 0.85 -0.2
870,151 - 10045 mRNA_1677 0.88 +2.6
870,160 + 10045 mRNA_1677 0.89 +0.1
870,252 + +1.7
870,401 + +1.1
870,402 - +0.2
870,403 + +2.9
870,403 + +0.1
870,404 - +0.5
870,406 - +0.7
870,417 + -0.8
870,422 + +0.1
870,426 + +1.1
870,436 + +0.1
870,437 + -0.6
873,291 - -1.3
873,475 + 10047 mRNA_1679 0.14 -0.6
873,665 + 10047 mRNA_1679 0.21 +0.5
874,004 + 10047 mRNA_1679 0.34 +0.2

Or see this region's nucleotide sequence