Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1685

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10052 and 10053 are separated by 525 nucleotides10053 and 10054 are separated by 810 nucleotides mRNA_1684: 10052 - Hypothetical Protein, at 883,850 to 884,776 10052 mRNA_1685: 10053 - Hypothetical Protein, at 885,302 to 886,420 10053 mRNA_1686: 10054 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 887,231 to 890,283 10054

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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884,726 + +0.4
884,807 - +1.4
884,824 - -0.1
884,842 - +0.8
884,869 - -2.0
884,876 + +0.4
884,921 + -1.8
884,926 + -0.3
884,933 + +1.8
884,944 - +1.8
884,954 + -1.0
884,978 - +1.9
885,024 - +1.4
885,033 + +0.4
885,178 + -0.6
885,310 + -0.0
886,384 + +0.5
886,407 - +1.4
886,413 + +0.6
886,418 + +0.1
886,458 + -1.2
886,564 - -1.9
886,567 - -0.2
886,588 + -0.1
886,622 + -0.1
886,627 - -0.1
886,645 + +0.8
886,673 + -0.1
886,702 + +0.6
886,715 - -0.0
886,742 + +0.9
886,743 - +1.1
886,744 - +1.2
886,859 + -0.1
886,878 - -0.1
886,881 + -0.0
886,884 - +2.3
886,887 + -1.1
886,922 + -1.4
886,926 - +0.3
886,939 - -0.4
887,032 - +0.3
887,057 - +1.4
887,071 - +0.3

Or see this region's nucleotide sequence