Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1693

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10060 and 10061 are separated by 259 nucleotides10061 and 10062 are separated by 393 nucleotides mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908,144 to 911,524 10060 mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911,784 to 914,454 10061 mRNA_1694: 10062 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,848 to 915,614 10062

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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911,151 - 10060 mRNA_1692 0.89 -0.8
911,463 + +2.5
911,592 - +1.5
911,622 + +0.2
911,635 - -0.1
911,773 + +0.4
911,777 + +0.3
911,933 - -0.1
911,999 - +0.7
912,026 - -0.1
912,307 + 10061 mRNA_1693 0.20 -0.2
912,451 - 10061 mRNA_1693 0.25 +1.0
912,582 + 10061 mRNA_1693 0.30 -2.1
912,869 - 10061 mRNA_1693 0.41 -0.8
912,875 + 10061 mRNA_1693 0.41 -0.9
912,938 - 10061 mRNA_1693 0.43 -1.4
912,996 - 10061 mRNA_1693 0.45 -1.3
913,006 + 10061 mRNA_1693 0.46 -0.5
913,062 + 10061 mRNA_1693 0.48 +0.0
913,179 + 10061 mRNA_1693 0.52 -1.9
913,210 + 10061 mRNA_1693 0.53 +0.6
913,312 - 10061 mRNA_1693 0.57 +1.3
913,343 - 10061 mRNA_1693 0.58 +1.0
913,413 - 10061 mRNA_1693 0.61 +0.3
913,483 - 10061 mRNA_1693 0.64 -1.0
913,704 + 10061 mRNA_1693 0.72 -2.4
913,728 + 10061 mRNA_1693 0.73 +1.6
913,917 - 10061 mRNA_1693 0.80 -0.2
913,921 + 10061 mRNA_1693 0.80 +0.1
914,048 + 10061 mRNA_1693 0.85 -1.0
914,114 - 10061 mRNA_1693 0.87 +1.0
914,261 - -0.4
914,455 + -0.7
914,788 + +0.2
914,798 - -0.0
914,799 - -0.1
914,799 + +0.6
914,801 + +0.2
914,824 - +2.0
914,922 - +0.2
914,953 - 10062 mRNA_1694 0.14 +0.7
914,977 + 10062 mRNA_1694 0.17 +0.7
915,020 - 10062 mRNA_1694 0.22 -0.2
915,123 - 10062 mRNA_1694 0.36 +0.3
915,169 - 10062 mRNA_1694 0.42 -0.8
915,260 - 10062 mRNA_1694 0.54 -0.2
915,435 - 10062 mRNA_1694 0.77 +0.2
915,436 + 10062 mRNA_1694 0.77 +1.0
915,436 - 10062 mRNA_1694 0.77 -1.5

Or see this region's nucleotide sequence