Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1735

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10102 and 10103 are separated by 963 nucleotides mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087 10102 mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843 10103

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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72,165 + +0.6
72,196 - +0.2
72,213 + +0.3
72,285 - +1.4
72,774 + -1.4
72,827 + -0.6
72,899 - -0.2
76,924 + +0.5
76,936 - +1.4
76,938 - +0.1
76,941 + -1.7
76,952 + +0.5
76,962 + +0.2
77,075 + -0.7
77,091 - +0.6
77,105 + +0.7
77,109 - -1.8
77,111 - -0.1
77,176 - -0.8
77,221 - +1.7
77,224 - -2.0
77,234 + -0.4
77,241 + +2.1
77,242 + +2.0
77,251 + -0.5
77,251 + +1.1
77,256 + +1.8
77,260 - -1.6
77,261 + -0.5
77,262 + -0.3
77,262 - +1.0
77,291 + +1.7
77,294 - +0.2
77,295 - -0.4
77,324 + +0.5
77,334 - +2.0
77,339 - -0.2
77,345 - +0.2
77,350 - +3.1
77,350 + +0.4
77,351 + -0.9
77,353 + -0.3
77,360 + -1.3
77,373 - +0.5
77,374 - -2.3
77,386 + -1.1
77,394 - -0.4
77,396 + +1.3
77,399 - +0.4
77,400 + +0.8
77,400 + +0.3
77,407 + +0.2
77,412 - -0.5
77,421 + -0.0
77,422 + +0.1
77,425 + +1.2
77,427 + -0.5
77,427 + -0.4
77,434 + +1.5
77,717 + +1.2
77,722 + +2.2

Or see this region's nucleotide sequence