Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1761

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10129 and 10130 are separated by 572 nucleotides mRNA_1761: 10129 - K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E, at 141,827 to 142,144 10129 mRNA_1762: 10130 - Hypothetical Protein, at 142,717 to 145,078 10130

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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140,946 + -0.6
141,087 + +2.0
141,224 - -0.6
141,231 - -0.2
141,247 - -0.0
141,560 - -1.2
141,936 + 10129 mRNA_1761 0.34 -1.2
141,959 + 10129 mRNA_1761 0.42 +0.8
141,993 + 10129 mRNA_1761 0.52 -0.8
142,241 + +1.1
142,509 - -2.2
142,567 - +1.3
142,586 - -1.5
142,594 - +0.1
142,622 + -0.3
142,630 - +0.9
142,641 - +2.4
142,649 - +0.9
142,661 + +0.0
142,673 + -0.4
142,693 - +0.0
142,772 - -1.2
142,918 + +0.8
142,966 - 10130 mRNA_1762 0.11 -0.6
142,980 + 10130 mRNA_1762 0.11 +0.3

Or see this region's nucleotide sequence