Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1782

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10149 and 10150 are separated by 277 nucleotides mRNA_1781: 10149 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 191,396 to 193,155 10149 mRNA_1782: 10150 - Hypothetical Protein, at 193,433 to 193,902 10150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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192,799 + 10149 mRNA_1781 0.80 +2.5
192,843 - 10149 mRNA_1781 0.82 -0.2
192,960 + 10149 mRNA_1781 0.89 -0.8
193,067 - +0.1
193,861 + -0.4
193,989 - +0.3
194,166 + +1.0
194,717 + -1.9
194,849 + -2.9
194,852 + -1.2

Or see this region's nucleotide sequence