Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1829

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10196 and 10197 are separated by 356 nucleotides10197 and 10198 are separated by 279 nucleotides mRNA_1828: 10196 - Hypothetical Protein, at 312,136 to 314,530 10196 mRNA_1829: 10197 - K20238 E2.1.1.317 sphingolipid C9-methyltransferase, at 314,887 to 317,031 10197 mRNA_1830: 10198 - K00809 DHPS, dys deoxyhypusine synthase, at 317,311 to 318,689 10198

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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314,575 + -0.6
314,575 - -0.7
314,720 + -0.1
315,169 + 10197 mRNA_1829 0.13 +0.2
315,421 + 10197 mRNA_1829 0.25 -0.6
317,058 - -0.4
317,077 - -0.1
317,081 - +0.5

Or see this region's nucleotide sequence