Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1858

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10225 and 10226 are separated by 712 nucleotides10226 and 10227 are separated by 248 nucleotides mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383,950 to 386,547 10225 mRNA_1858: 10226 - K19245 JLP1 sulfonate dioxygenase, at 387,260 to 388,608 10226 mRNA_1859: 10227 - SUPERFAMILY--SSF57997, at 388,857 to 391,098 10227

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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386,340 - +0.9
386,493 - -0.5
386,504 - -0.1
386,512 + -0.1
386,633 + +0.0
386,658 - +1.0
386,798 + +0.2
386,815 - +0.6
386,821 + -0.1
386,823 + +0.8
386,932 - -0.5
386,952 - -0.2
386,962 - -0.3
386,963 + +2.9
386,966 - -0.4
386,966 - +0.7
386,972 - -1.1
386,974 + +0.1
386,976 - +0.0
387,098 - -0.1
387,128 + -1.8
387,147 + +0.5
387,241 + +0.5
387,286 - -0.6
387,394 - -0.4
387,397 + 10226 mRNA_1858 0.10 -0.3
387,532 - 10226 mRNA_1858 0.20 +0.4
387,581 - 10226 mRNA_1858 0.24 +0.2
388,434 + 10226 mRNA_1858 0.87 -0.3
388,803 - -1.5
389,110 - 10227 mRNA_1859 0.11 +0.8
389,157 + 10227 mRNA_1859 0.13 +0.1
389,281 - 10227 mRNA_1859 0.19 +0.1
389,515 - 10227 mRNA_1859 0.29 -1.0

Or see this region's nucleotide sequence