Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1866

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10233 and 10234 are separated by 162 nucleotides10234 and 10235 are separated by 445 nucleotides mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399,738 to 401,124 10233 mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401,287 to 402,071 10234 mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402,517 to 403,659 10235

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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401,202 + -0.2
401,232 - +0.3
401,241 - +1.1
401,241 - +0.7
401,381 - 10234 mRNA_1866 0.12 -0.4
401,393 - 10234 mRNA_1866 0.14 -0.4
401,515 + 10234 mRNA_1866 0.29 -1.3
401,660 - 10234 mRNA_1866 0.48 -0.1
401,706 + 10234 mRNA_1866 0.53 -1.4
401,972 + 10234 mRNA_1866 0.87 +0.2
401,993 + -0.2
402,104 - -1.4
402,126 + +1.2
402,181 - -0.6
402,184 + +1.8
402,246 - -2.3
402,271 + -0.4
402,279 + +1.7
402,306 - -0.1
402,332 + +0.2
402,335 - -0.1
402,444 + -0.9
402,573 + -0.5
402,868 + 10235 mRNA_1867 0.31 +2.0

Or see this region's nucleotide sequence