Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1931

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10299 and 10300 are separated by 287 nucleotides mRNA_1931: 10299 - KOG2112 Lysophospholipase, at 542,776 to 544,439 10299 mRNA_1932: 10300 - BLAST family 69 glycosyltransferase [Melampsora larici-..., at 544,727 to 545,015 10300

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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541,787 + +0.1
541,804 + +0.7
541,875 + +0.1
541,910 + -0.0
541,911 - +0.1
541,912 + -0.6
541,933 + +0.2
541,964 - +0.6
541,976 + -0.4
541,987 + -1.8
542,008 + +0.7
542,070 - +1.2
542,094 - -1.4
542,105 + -1.3
542,110 - +0.9
542,111 - +0.1
542,115 + +0.2
542,132 + +0.8
542,147 - -1.4
542,148 + +0.6
542,151 - +1.0
542,227 + -1.4
542,242 - +1.4
542,249 - +1.4
542,252 - -0.7
542,261 - -0.1
542,273 + +1.3
542,295 + +1.4
542,297 + -1.9
542,324 - -0.3
542,372 + +0.0
542,375 - -2.2
542,377 + -0.4
542,384 + -3.1
542,399 - -0.3
542,403 - -0.5
542,404 + -0.3
542,407 + +0.7
542,407 - +0.6
542,408 + -0.5
542,409 + -0.2
542,410 - -0.4
542,411 - -2.8
542,414 + +0.3
542,417 - +0.5
542,417 - +1.0
542,421 + +0.8
542,424 - +0.7
542,424 - -0.9
542,426 - -0.7
542,428 - -0.8
542,428 + -0.6
542,431 + -0.1
542,446 + -0.1
542,451 + -0.8
542,452 - -0.2
542,452 - +1.0
542,454 - +1.7
542,467 - -0.4
542,470 + +0.2
542,478 - -0.2
542,484 - +0.2
542,485 - +0.2
542,485 - -1.8
542,485 - +0.9
542,497 + -1.3
542,501 - -0.7
542,506 - +0.9
542,515 + -0.2
542,520 + +0.8
542,521 + -0.0
542,522 + -0.7
542,527 - +0.5
542,530 + -0.4
542,533 + -0.4
542,538 + +1.7
542,547 - -0.3
542,548 - +2.7
542,568 + +0.8
542,582 + +0.5
542,620 - -0.0
542,631 - -0.1
542,632 + -1.1
542,642 + +0.0
542,647 - -0.8
542,647 - +0.3
542,653 - -0.6
542,654 + +1.1
542,658 - +0.3
542,662 - +1.6
542,662 - +1.4
542,663 + +1.3
542,671 - +1.3
542,672 - +0.8
542,672 - +1.3
542,672 - +0.7
542,679 - -1.0
542,680 + -0.2
542,682 + +1.2
542,686 - -0.1
542,687 - -0.5
542,688 + -0.5
542,689 + +0.3
542,692 + +0.2
542,693 + +1.3
542,703 - +2.0
542,704 + +0.4
542,705 - +1.7
542,707 + -2.0
542,708 - -0.5
542,710 - -0.6
542,731 + +1.3
542,739 - +0.7
542,742 + -1.9
542,782 + -0.4
542,822 + +0.9
542,851 + -0.1
542,863 - -1.5
542,989 - 10299 mRNA_1931 0.13 +1.8
542,989 + 10299 mRNA_1931 0.13 -1.1
543,026 + 10299 mRNA_1931 0.15 +1.8
543,133 - 10299 mRNA_1931 0.21 -0.8
543,135 + 10299 mRNA_1931 0.22 +0.8
543,136 + 10299 mRNA_1931 0.22 +0.5
543,143 - 10299 mRNA_1931 0.22 -0.3
543,143 - 10299 mRNA_1931 0.22 -1.0
543,153 + 10299 mRNA_1931 0.23 -0.4
543,154 - 10299 mRNA_1931 0.23 +0.8
543,165 - 10299 mRNA_1931 0.23 +1.1
543,174 + 10299 mRNA_1931 0.24 +1.3
543,234 + 10299 mRNA_1931 0.28 -2.6
543,253 + 10299 mRNA_1931 0.29 +1.7
543,268 - 10299 mRNA_1931 0.30 +1.1
543,273 + 10299 mRNA_1931 0.30 -0.3
543,286 - 10299 mRNA_1931 0.31 +0.7
543,293 - 10299 mRNA_1931 0.31 -0.6
543,294 + 10299 mRNA_1931 0.31 +1.1
543,297 + 10299 mRNA_1931 0.31 -1.2
543,298 - 10299 mRNA_1931 0.31 -0.0
543,303 + 10299 mRNA_1931 0.32 +0.5
543,307 + 10299 mRNA_1931 0.32 +0.8
543,307 - 10299 mRNA_1931 0.32 -0.1
543,310 + 10299 mRNA_1931 0.32 -1.7
543,314 + 10299 mRNA_1931 0.32 -0.9
543,315 - 10299 mRNA_1931 0.32 -0.3
543,323 - 10299 mRNA_1931 0.33 -0.8
543,323 - 10299 mRNA_1931 0.33 -0.0
543,324 + 10299 mRNA_1931 0.33 -0.3
543,324 + 10299 mRNA_1931 0.33 +0.6
543,328 + 10299 mRNA_1931 0.33 +0.3
543,331 + 10299 mRNA_1931 0.33 -3.1
543,332 + 10299 mRNA_1931 0.33 +0.5
543,372 - 10299 mRNA_1931 0.36 -0.1
543,382 - 10299 mRNA_1931 0.36 -1.6
543,388 + 10299 mRNA_1931 0.37 -1.4
543,389 + 10299 mRNA_1931 0.37 -0.2
543,432 + 10299 mRNA_1931 0.39 -0.8
543,447 - 10299 mRNA_1931 0.40 +0.2
543,454 - 10299 mRNA_1931 0.41 -0.2
543,459 - 10299 mRNA_1931 0.41 +0.8
543,460 - 10299 mRNA_1931 0.41 +0.1
543,485 - 10299 mRNA_1931 0.43 +0.5
543,493 - 10299 mRNA_1931 0.43 -1.5
543,506 - 10299 mRNA_1931 0.44 -0.5
543,527 - 10299 mRNA_1931 0.45 -0.7
543,613 + 10299 mRNA_1931 0.50 -2.7
543,616 - 10299 mRNA_1931 0.50 -0.4
543,737 - 10299 mRNA_1931 0.58 +0.2
543,756 - 10299 mRNA_1931 0.59 +0.5
544,055 - 10299 mRNA_1931 0.77 +0.2
544,203 + 10299 mRNA_1931 0.86 +1.2
544,346 - -0.8
544,363 - +1.5
544,483 + -2.4
544,489 + -2.3
544,505 + -0.4
544,509 + +0.0
544,630 + -1.7
544,667 - +1.0
544,770 + 10300 mRNA_1932 0.15 +0.5
544,900 - 10300 mRNA_1932 0.60 +1.2
544,943 + 10300 mRNA_1932 0.75 -0.2
545,378 + -0.5

Or see this region's nucleotide sequence