Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1939

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10306 and 10307 are separated by 317 nucleotides10307 and 10308 are separated by 560 nucleotides mRNA_1938: 10306 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 556,583 to 558,262 10306 mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558,580 to 560,603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561,164 to 563,777 10308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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557,589 + 10306 mRNA_1938 0.60 +0.6
557,738 - 10306 mRNA_1938 0.69 +1.0
557,848 + 10306 mRNA_1938 0.75 +0.4
558,163 + -0.1
558,268 + +0.4
558,272 - -2.6
558,618 - -0.5
559,072 + 10307 mRNA_1939 0.24 +1.0
559,223 - 10307 mRNA_1939 0.32 +0.2
559,228 + 10307 mRNA_1939 0.32 -0.0
559,360 + 10307 mRNA_1939 0.39 +0.1
559,684 + 10307 mRNA_1939 0.55 +0.3
559,817 - 10307 mRNA_1939 0.61 -1.6
559,836 + 10307 mRNA_1939 0.62 -0.1
559,894 + 10307 mRNA_1939 0.65 -0.9
560,181 + 10307 mRNA_1939 0.79 +0.5
560,236 - 10307 mRNA_1939 0.82 -0.5
560,531 - +0.9
560,666 - +0.4
560,684 + -1.6
560,688 - -0.7
560,696 + +0.6
560,716 + +1.6
560,720 + +1.1
560,726 + +0.8
560,727 - -0.1
560,747 - -1.1
560,756 - -1.7
560,781 + -0.4
560,798 - +0.3
560,817 + +0.6
560,826 + +0.2
560,827 - -0.3
560,836 - -1.6
560,840 + -0.2
560,850 + -1.3
560,852 - +0.5
560,864 + -0.6
560,864 - -0.1
560,986 - +0.8
560,990 - +0.0
560,991 + -0.4
560,996 - -0.7
560,997 - -0.9
561,002 + +1.2
561,002 - +0.5
561,009 + +0.8
561,011 + -0.4
561,011 + +1.5
561,014 - -0.5
561,024 - +2.6
561,026 + -0.8
561,030 + +0.9
561,031 + +1.2
561,034 + -0.1
561,059 + +0.4
561,059 - -1.2
561,065 + +0.4
561,067 - +0.2
561,068 + -0.1
561,075 - -0.3
561,076 + -0.2
561,077 + +2.2
561,081 - -0.9
561,083 + +0.1
561,089 - -0.4
561,091 + +0.8
561,093 + -0.2
561,093 + -0.4
561,095 - -1.5
561,098 + -1.0
561,104 + +0.4
561,104 + -0.9
561,106 + +1.1
561,208 + +1.2
561,227 - -1.1
561,232 + -1.7
561,243 - -0.6
561,244 + +1.6
561,339 + +0.8
561,519 - 10308 mRNA_1940 0.14 -1.6
561,592 - 10308 mRNA_1940 0.16 +0.7

Or see this region's nucleotide sequence