Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1980

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10347 and 10348 are separated by 400 nucleotides10348 and 10349 are separated by 791 nucleotides mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661,978 to 663,393 10347 mRNA_1980: 10348 - KOG3436 60S ribosomal protein L35, at 663,794 to 664,282 10348 mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665,074 to 666,880 10349

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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662,799 + 10347 mRNA_1979 0.58 +0.1
662,952 + 10347 mRNA_1979 0.69 +1.5
662,970 + 10347 mRNA_1979 0.70 -0.4
663,104 - 10347 mRNA_1979 0.80 -0.0
663,125 - 10347 mRNA_1979 0.81 +0.2
663,135 - 10347 mRNA_1979 0.82 -0.3
663,306 + -0.9
663,419 - +1.0
663,735 + -0.1
664,745 + -0.3
664,792 - -0.6
664,800 - +0.5
664,883 + +3.2
665,262 - 10349 mRNA_1981 0.10 +0.9

Or see this region's nucleotide sequence