Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1982

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10349 and 10350 are separated by 367 nucleotides10350 and 10351 are separated by 935 nucleotides mRNA_1981: 10349 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 665,074 to 666,880 10349 mRNA_1982: 10350 - HMMPfam-Copper binding proteins, plastocyanin/azurin family-PF00127,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF49503, at 667,248 to 669,066 10350 mRNA_1983: 10351 - K07213 ATOX1, ATX1, copZ, golB copper chaperone, at 670,002 to 670,488 10351

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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666,407 - 10349 mRNA_1981 0.74 -0.1
666,708 - +0.4
666,793 + -2.1
667,295 + +0.2
667,732 + 10350 mRNA_1982 0.27 -1.7
668,010 - 10350 mRNA_1982 0.42 -0.0
668,013 + 10350 mRNA_1982 0.42 -0.7
668,133 - 10350 mRNA_1982 0.49 +0.7
668,161 + 10350 mRNA_1982 0.50 +0.3
668,451 - 10350 mRNA_1982 0.66 -0.9
668,915 - +0.5
669,221 + +1.6
669,788 - +1.3
669,929 - -0.2
669,932 - -0.4
669,942 + -1.5
669,943 + -0.1

Or see this region's nucleotide sequence