Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1984

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10351 and 10352 are separated by 141 nucleotides10352 and 10353 are separated by 672 nucleotides mRNA_1983: 10351 - K07213 ATOX1, ATX1, copZ, golB copper chaperone, at 670,002 to 670,488 10351 mRNA_1984: 10352 - Hypothetical Protein, at 670,630 to 671,905 10352 mRNA_1985: 10353 - Hypothetical Protein, at 672,578 to 672,870 10353

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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669,788 - +1.3
669,929 - -0.2
669,932 - -0.4
669,942 + -1.5
669,943 + -0.1
670,816 - 10352 mRNA_1984 0.15 -1.5
671,007 + 10352 mRNA_1984 0.30 +0.1
671,440 - 10352 mRNA_1984 0.63 -0.1
671,566 + 10352 mRNA_1984 0.73 +0.1
671,679 - 10352 mRNA_1984 0.82 +1.5
671,735 + 10352 mRNA_1984 0.87 -0.7
672,009 + -2.7
672,154 + +1.9
672,366 + -0.6
672,737 + 10353 mRNA_1985 0.54 -0.4
672,887 + -0.5

Or see this region's nucleotide sequence