Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2028

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10395 and 10396 are separated by 958 nucleotides mRNA_2027: 10395 - K07208 RHEB Ras homolog enriched in brain, at 780,264 to 781,182 10395 mRNA_2028: 10396 - HMMPfam-TENA/THI-4/PQQC family-PF03070,SUPERFAMILY--SSF48613, at 782,141 to 783,596 10396

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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781,229 + -0.6
781,478 + -0.1
781,493 + +0.2
781,503 + +0.5
781,520 + +0.5
781,678 + -0.1
781,768 - +1.7
781,791 - -0.3
781,807 - +0.5
781,811 + +0.5
781,900 - +2.6
781,917 - -0.9
781,927 + +0.3
781,932 - +0.3
781,936 + +1.2
782,075 - -2.1
782,082 + +0.6
782,084 + -1.1
782,085 - -1.6
782,085 - -1.3
782,086 - +1.5
782,092 + +0.2
782,096 + +0.3
782,097 + +0.4
782,123 + -0.3
782,124 - -1.3
782,212 - -0.2
782,214 + -1.6
782,238 + -0.7
782,238 - -0.6
782,248 + +0.5
782,256 + +0.1
782,262 + +0.2
782,277 + -1.0
782,369 - 10396 mRNA_2028 0.16 +2.1
782,381 + 10396 mRNA_2028 0.16 +0.8
782,391 + 10396 mRNA_2028 0.17 -2.5
782,395 + 10396 mRNA_2028 0.17 -0.1
782,400 - 10396 mRNA_2028 0.18 -1.0
782,437 + 10396 mRNA_2028 0.20 -1.0
782,439 + 10396 mRNA_2028 0.20 +2.8
782,571 - 10396 mRNA_2028 0.30 -2.3
782,694 - 10396 mRNA_2028 0.38 +0.5
782,803 - 10396 mRNA_2028 0.45 -0.3
783,399 - 10396 mRNA_2028 0.86 +0.1
783,439 + 10396 mRNA_2028 0.89 +0.1
783,695 + +0.5
783,833 - -0.1
783,854 + +0.2
783,858 - +0.1
783,914 + -1.4
784,091 + +0.2
784,114 - -0.3
784,147 - -0.4
784,181 - -1.5
784,187 + -0.3
784,201 + -3.6
784,309 - -0.6
784,318 - -0.1
784,335 + +0.3
784,339 + -0.8
784,493 - -0.9
784,508 - -0.5
784,526 + -0.6
784,546 - +2.2
784,574 + +1.0

Or see this region's nucleotide sequence