Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2051

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10418 and 10419 are separated by 328 nucleotides10419 and 10420 are separated by 913 nucleotides mRNA_2050: 10418 - K02725 PSMA1 20S proteasome subunit alpha 6, at 835,073 to 836,370 10418 mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836,699 to 837,795 10419 mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838,709 to 841,749 10420

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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836,326 + -0.3
836,519 - +0.5
836,541 + -0.6
836,542 - -0.1
836,680 - -0.9
836,819 - 10419 mRNA_2051 0.11 -1.0
836,856 + 10419 mRNA_2051 0.14 +1.4
837,095 - 10419 mRNA_2051 0.36 +0.6
837,140 + 10419 mRNA_2051 0.40 +0.6
837,447 + 10419 mRNA_2051 0.68 +1.0
837,538 - 10419 mRNA_2051 0.76 +3.0
837,827 - +1.2
837,959 - +1.0
838,000 - +1.1
838,130 + +1.3
838,279 - +0.9
838,309 + +0.3
838,414 + +2.1
838,483 + +0.6
838,535 - +2.0
838,538 + -0.8
838,568 - -1.6
838,569 + +0.4
838,570 + +1.6
838,571 + -0.9
838,571 + -0.1
838,572 + -0.8
838,579 + -2.3
838,580 + -0.7
838,583 + -1.8
838,587 + -0.7
838,595 + +0.1
838,596 + +0.5
838,597 + -0.8
838,760 + -2.1

Or see this region's nucleotide sequence