Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2115

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10482 and 10483 are separated by 162 nucleotides10483 and 10484 are separated by 762 nucleotides mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105,978 to 107,393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107,556 to 109,708 10483 mRNA_2116: 10484 - K01184 E3.2.1.15 polygalacturonase, at 110,471 to 111,882 10484

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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106,645 + 10482 mRNA_2114 0.47 +1.4
106,656 - 10482 mRNA_2114 0.48 +0.1
106,725 + 10482 mRNA_2114 0.53 -0.1
106,810 + 10482 mRNA_2114 0.59 +0.9
106,969 + 10482 mRNA_2114 0.70 +1.6
106,972 + 10482 mRNA_2114 0.70 -0.7
107,095 - 10482 mRNA_2114 0.79 +0.3
107,103 - 10482 mRNA_2114 0.79 -0.5
107,117 + 10482 mRNA_2114 0.80 -0.6
107,304 + +0.2
107,421 - +0.8
107,423 + -1.3
107,423 + +1.6
107,436 + +1.4
107,438 - +0.8
107,444 + -2.3
107,490 - +0.5
107,562 - -0.3
107,577 - +0.6
107,580 - -0.1
107,591 - -1.3
107,627 + +0.0
107,992 - 10483 mRNA_2115 0.20 +0.0
108,029 + 10483 mRNA_2115 0.22 -0.1
108,040 + 10483 mRNA_2115 0.22 -0.1
108,082 + 10483 mRNA_2115 0.24 -1.1
108,157 - 10483 mRNA_2115 0.28 +0.8
108,176 - 10483 mRNA_2115 0.29 +0.5
108,208 - 10483 mRNA_2115 0.30 -0.5
108,314 + 10483 mRNA_2115 0.35 -0.2
108,581 + 10483 mRNA_2115 0.48 -0.6
108,615 + 10483 mRNA_2115 0.49 -2.3
108,674 - 10483 mRNA_2115 0.52 +1.8
108,805 + 10483 mRNA_2115 0.58 +1.0
108,856 - 10483 mRNA_2115 0.60 -1.4
108,862 + 10483 mRNA_2115 0.61 +0.0
109,303 + 10483 mRNA_2115 0.81 -0.4
109,350 - 10483 mRNA_2115 0.83 +0.4
109,351 + 10483 mRNA_2115 0.83 -1.8
109,374 - 10483 mRNA_2115 0.84 +0.0
109,374 - 10483 mRNA_2115 0.84 +1.0
109,386 - 10483 mRNA_2115 0.85 +1.1
109,394 - 10483 mRNA_2115 0.85 +0.8
109,434 + 10483 mRNA_2115 0.87 -2.7
109,492 - 10483 mRNA_2115 0.90 +0.8
109,611 + +0.5
109,760 + +0.0
109,901 - -0.6
109,911 - -0.7
109,911 - +0.7
109,974 + -0.5
110,172 + -0.4
110,241 - +0.8
110,480 + +2.1
110,580 + -2.6
110,676 + 10484 mRNA_2116 0.15 +1.3

Or see this region's nucleotide sequence