Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2123

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10490 and 10491 are separated by 348 nucleotides10491 and 10492 are separated by 60 nucleotides mRNA_2122: 10490 - K00103 GULO L-gulonolactone oxidase, at 124,559 to 126,866 10490 mRNA_2123: 10491 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 127,215 to 128,574 10491 mRNA_2124: 10492 - Hypothetical Protein, at 128,635 to 129,596 10492

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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126,270 - 10490 mRNA_2122 0.74 -0.1
126,440 + 10490 mRNA_2122 0.81 +0.4
126,861 + +0.9
126,861 - -1.0
127,144 - +0.8
127,149 + +1.3
127,273 - +1.7
127,582 - 10491 mRNA_2123 0.27 -0.9
127,696 - 10491 mRNA_2123 0.35 +0.0
127,782 + 10491 mRNA_2123 0.42 +2.2
127,865 - 10491 mRNA_2123 0.48 -0.3
128,002 + 10491 mRNA_2123 0.58 +0.6
128,456 + +0.6
128,484 + +2.4
128,789 - 10492 mRNA_2124 0.16 +0.0
128,874 - 10492 mRNA_2124 0.25 -0.1
128,874 - 10492 mRNA_2124 0.25 -0.9
129,047 + 10492 mRNA_2124 0.43 +2.1
129,074 - 10492 mRNA_2124 0.46 -0.6
129,203 + 10492 mRNA_2124 0.59 +0.5
129,230 + 10492 mRNA_2124 0.62 -0.6

Or see this region's nucleotide sequence