Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2164

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10531 and 10532 are separated by 200 nucleotides10532 and 10533 are separated by 169 nucleotides mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226,223 to 229,992 10531 mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230,193 to 233,259 10532 mRNA_2165: 10533 - Hypothetical Protein, at 233,429 to 233,973 10533

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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230,256 - -2.3
230,306 + -0.1
230,563 - 10532 mRNA_2164 0.12 -1.1
230,634 + 10532 mRNA_2164 0.14 -0.6
230,657 - 10532 mRNA_2164 0.15 +1.4
233,312 - +1.0
233,317 - +1.1
233,337 + -0.1
233,342 + +0.1
233,344 - -0.1
233,351 - +0.8
233,354 - +1.0
233,357 + -0.0
233,358 + +1.8
233,359 - +1.1
233,369 + +2.6
233,369 + -0.0
233,372 - -1.9
233,375 + -0.9
233,447 - +1.5
233,487 - 10533 mRNA_2165 0.11 +0.7
233,499 - 10533 mRNA_2165 0.13 +1.4
233,525 - 10533 mRNA_2165 0.18 -0.5
233,529 + 10533 mRNA_2165 0.18 -0.8
233,624 + 10533 mRNA_2165 0.36 +1.0
233,636 - 10533 mRNA_2165 0.38 -0.9
233,667 - 10533 mRNA_2165 0.44 -0.1
233,686 - 10533 mRNA_2165 0.47 -1.0
233,691 + 10533 mRNA_2165 0.48 +0.1
233,731 + 10533 mRNA_2165 0.55 -0.0
233,793 - 10533 mRNA_2165 0.67 -1.1
233,803 + 10533 mRNA_2165 0.69 -2.1
234,097 + -0.5
234,099 - -0.9
234,115 + -1.2
234,188 - -0.7

Or see this region's nucleotide sequence