Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2177

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10545 and 10546 are separated by 405 nucleotides mRNA_2177: 10545 - Hypothetical Protein, at 264,370 to 265,030 10545 mRNA_2178: 10546 - Hypothetical Protein, at 265,436 to 267,124 10546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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263,499 - +0.1
263,504 + +1.6
263,615 + +1.4
263,623 - -0.9
263,773 + +1.8
263,794 - -3.7
263,816 + +0.8
263,816 + +1.0
263,816 + +0.9
263,819 - +0.0
263,924 - +0.3
263,955 + -2.2
263,966 + -0.4
263,998 + +0.2
264,101 + +1.1
264,247 + -0.1
264,383 - +0.0
264,534 + 10545 mRNA_2177 0.25 +0.1
264,547 - 10545 mRNA_2177 0.27 +0.5
264,686 + 10545 mRNA_2177 0.48 +2.9
264,790 - 10545 mRNA_2177 0.64 -0.7
264,972 + +1.3
265,429 + -1.0
265,603 + -0.4
265,603 + -1.5
265,629 + 10546 mRNA_2178 0.11 -0.9
265,661 - 10546 mRNA_2178 0.13 -0.3
265,697 - 10546 mRNA_2178 0.15 +0.5
266,012 - 10546 mRNA_2178 0.34 -0.6

Or see this region's nucleotide sequence