Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2186

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10554 and 10555 are separated by 371 nucleotides mRNA_2186: 10554 - K06316 RFT1 oligosaccharide translocation protein RFT1, at 289,914 to 291,585 10554 mRNA_2187: 10555 - K09602 OTUB1 ubiquitin thioesterase protein OTUB1, at 291,957 to 293,217 10555

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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288,919 + -1.6
289,047 + +0.2
289,195 - +0.6
289,201 - -1.5
289,214 + +1.0
289,220 - +0.3
289,224 - -0.1
289,334 - +1.6
289,353 - -1.7
289,354 + +0.8
289,363 + -0.7
289,368 + +0.3
289,371 + +0.2
289,375 + -0.2
289,471 - -1.0
289,473 + -0.8
289,502 - +0.7
289,625 - +0.0
289,649 + +0.7
289,810 - +0.1
291,673 + +0.3
291,697 - +0.4
291,712 + +1.4
291,714 - -1.5
291,838 + -0.5
291,858 + +0.4
292,132 - 10555 mRNA_2187 0.14 -0.3

Or see this region's nucleotide sequence