Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2222

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10589 and 10590 are separated by 249 nucleotides10590 and 10591 are separated by 122 nucleotides mRNA_2221: 10589 - KOG0379 Kelch repeat-containing proteins, at 391,233 to 393,813 10589 mRNA_2222: 10590 - K14801 TSR4 pre-rRNA-processing protein TSR4, at 394,063 to 398,428 10590 mRNA_2223: 10591 - Hypothetical Protein, at 398,551 to 400,277 10591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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393,251 + 10589 mRNA_2221 0.78 +0.1
393,550 - 10589 mRNA_2221 0.90 +1.6
393,687 - +1.3
393,787 - -0.5
393,849 - -0.4
393,862 - -0.7
394,009 - -0.0
394,156 - -1.2
394,162 - +1.4
398,399 + -1.0
398,516 + +1.2
398,677 - -1.0
398,795 - 10591 mRNA_2223 0.14 +1.3
398,804 + 10591 mRNA_2223 0.15 -0.3
399,044 - 10591 mRNA_2223 0.29 -0.5
399,244 - 10591 mRNA_2223 0.40 +0.2
399,359 - 10591 mRNA_2223 0.47 -1.4

Or see this region's nucleotide sequence