Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2313

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10680 and 10681 are separated by 167 nucleotides10681 and 10682 are separated by 183 nucleotides mRNA_2312: 10680 - K00275 pdxH, PNPO pyridoxamine 5'-phosphate oxidase, at 583,261 to 584,055 10680 mRNA_2313: 10681 - K13343 PEX14 peroxin-14, at 584,223 to 585,492 10681 mRNA_2314: 10682 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 585,676 to 588,935 10682

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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584,130 - -0.7
584,210 - +0.2
585,569 - +0.1
585,573 - +0.1
585,577 - -1.4
585,578 - +2.8
585,591 - -0.9
585,591 + +0.2
585,592 + +0.2
585,653 - -1.1
585,653 - +0.3
585,662 - -1.2
585,668 - -0.4
585,774 + +0.5
585,783 + +1.8
585,853 - +1.9
585,934 + -0.1
585,948 - +0.3

Or see this region's nucleotide sequence