Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2326

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10693 and 10694 are separated by 105 nucleotides10694 and 10695 are separated by 565 nucleotides mRNA_2325: 10693 - Hypothetical Protein, at 613,315 to 614,433 10693 mRNA_2326: 10694 - K03439 trmB, METTL1 tRNA (guanine-N7-)-methyltransferase, at 614,539 to 615,888 10694 mRNA_2327: 10695 - Hypothetical Protein, at 616,454 to 617,684 10695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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613,885 + 10693 mRNA_2325 0.51 +0.1
614,031 + 10693 mRNA_2325 0.64 +0.0
614,060 - 10693 mRNA_2325 0.67 +1.2
614,354 + -1.4
615,935 - +0.2
615,962 - -1.1
616,081 - -0.8
616,124 + +0.5
616,219 - +0.1
616,231 + +1.0
616,431 - +0.4
616,515 + +0.1
616,699 + 10695 mRNA_2327 0.20 -0.2

Or see this region's nucleotide sequence