Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2385

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10752 and 10753 are separated by 279 nucleotides10753 and 10754 are separated by 471 nucleotides mRNA_2384: 10752 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 764,160 to 765,511 10752 mRNA_2385: 10753 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 765,791 to 769,298 10753 mRNA_2386: 10754 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 769,770 to 774,280 10754

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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765,696 + -0.1
769,065 - +0.1
769,553 - -2.6
769,575 - +0.8
769,576 + -0.4
769,618 + -0.9
769,619 + -0.2
769,751 + +0.3
769,751 + +0.6
769,755 + -0.0
770,055 + +0.6
770,191 - -1.8

Or see this region's nucleotide sequence