Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2461

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10828 and 10829 are separated by 138 nucleotides10829 and 10830 are separated by 810 nucleotides mRNA_2460: 10828 - SUPERFAMILY--SSF57997, at 188,946 to 195,534 10828 mRNA_2461: 10829 - Hypothetical Protein, at 195,673 to 198,074 10829 mRNA_2462: 10830 - SUPERFAMILY--SSF52047, at 198,885 to 199,828 10830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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194,711 + 10828 mRNA_2460 0.87 +0.6
196,114 + 10829 mRNA_2461 0.18 +0.5
196,685 + 10829 mRNA_2461 0.42 +0.4
197,031 + 10829 mRNA_2461 0.57 +1.0
197,040 + 10829 mRNA_2461 0.57 -1.0
197,442 + 10829 mRNA_2461 0.74 -0.4
197,896 + -0.3
198,031 - +1.2
198,050 + +0.3
198,351 - -0.0
198,632 + -2.4
198,636 - -0.1
198,637 + +2.5
198,670 - -0.7
198,790 + +1.0

Or see this region's nucleotide sequence