Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2465

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10833 and 10834 are separated by 450 nucleotides mRNA_2465: 10833 - K09291 TPR, MLP1, MLP2 nucleoprotein TPR, at 206,394 to 209,572 10833 mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249 10834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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206,528 - +2.3
209,625 + +1.6
209,626 - -2.6
209,634 - +0.3
209,646 - -1.3
209,654 + -1.2
209,655 - -0.5
209,696 - +1.3
209,697 + -0.6
209,734 + -0.2
210,049 + -0.1
210,106 - -0.2
210,146 + -0.3
210,257 - +1.3
210,373 - +0.7
210,407 + +1.0
210,417 + +0.3
210,554 - 10834 mRNA_2466 0.10 +0.7

Or see this region's nucleotide sequence