Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2502

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10869 and 10870 are separated by 250 nucleotides10870 and 10871 are separated by 527 nucleotides mRNA_2501: 10869 - K00852 rbsK, RBKS ribokinase, at 301,795 to 303,224 10869 mRNA_2502: 10870 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 303,475 to 306,650 10870 mRNA_2503: 10871 - SUPERFAMILY--SSF63829, at 307,178 to 308,891 10871

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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302,896 + 10869 mRNA_2501 0.77 -1.2
303,033 + 10869 mRNA_2501 0.87 +0.2
303,064 - 10869 mRNA_2501 0.89 -0.0
303,386 + +1.0
303,454 - +0.8
303,504 + -0.5
304,082 - 10870 mRNA_2502 0.19 +0.5
304,362 + 10870 mRNA_2502 0.28 -1.6
304,378 - 10870 mRNA_2502 0.28 +2.6
304,843 - 10870 mRNA_2502 0.43 +0.8
305,384 - 10870 mRNA_2502 0.60 -0.9
305,389 + 10870 mRNA_2502 0.60 -1.1
305,669 - 10870 mRNA_2502 0.69 +1.4
305,817 + 10870 mRNA_2502 0.74 +1.3
305,825 + 10870 mRNA_2502 0.74 -0.1
305,835 - 10870 mRNA_2502 0.74 +0.6
305,947 - 10870 mRNA_2502 0.78 -0.6
305,986 + 10870 mRNA_2502 0.79 -0.0
306,151 + 10870 mRNA_2502 0.84 -0.4
306,308 - 10870 mRNA_2502 0.89 -1.4
306,310 + 10870 mRNA_2502 0.89 -1.1
306,316 - 10870 mRNA_2502 0.89 +0.7
306,318 - 10870 mRNA_2502 0.90 -1.1
306,511 + -2.0
306,570 - +1.2
306,591 - +0.1
306,593 - -0.1
306,594 - -1.2
306,595 + -1.3
306,609 - +0.4
306,611 + -0.3
306,717 - +0.2
306,728 - +0.6
306,734 - +1.7
306,750 + -1.7
306,801 - -0.3
306,818 - -1.9
306,824 + +1.3
306,841 + +0.2
306,847 - +1.4
306,851 - +0.3
306,852 - -1.7
306,856 - -0.8
306,884 - +1.5
306,887 - +0.2
306,887 - -1.1
306,895 + -0.9
306,904 - +1.1
306,982 + -0.1
306,987 - +0.1
306,996 + -1.2
306,998 - -0.9
306,999 + -0.1
307,008 + +1.1
307,021 + -0.1
307,046 - -0.6
307,058 - +2.0
307,063 - -1.6
307,073 - -1.1
307,077 - +0.3
307,081 + -0.3
307,125 - -1.4
307,143 - +1.1
307,149 + +1.8
307,196 + +0.0
307,197 + +1.2
307,199 + +1.3
307,206 - -3.1
307,208 + -0.4
307,208 + +0.2
307,211 + +0.7
307,212 - -0.3
307,222 - -2.3
307,233 + -1.4
307,235 - -0.2
307,238 + +0.3
307,247 + +0.4
307,252 + +0.6
307,253 - +1.6
307,255 - +0.2
307,328 - -0.8

Or see this region's nucleotide sequence