Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2518

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10885 and 10886 are separated by 144 nucleotides mRNA_2517: 10885 - K01078 E3.1.3.2 acid phosphatase, at 337,169 to 339,877 10885 mRNA_2518: 10886 - K03189 ureG urease accessory protein, at 340,022 to 341,494 10886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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339,151 - 10885 mRNA_2517 0.73 +2.2
339,157 - 10885 mRNA_2517 0.73 +1.3
339,170 - 10885 mRNA_2517 0.74 -0.8
339,177 + 10885 mRNA_2517 0.74 +1.7
339,185 + 10885 mRNA_2517 0.74 +1.1
339,218 - 10885 mRNA_2517 0.76 +2.2
339,222 + 10885 mRNA_2517 0.76 +2.3
339,224 - 10885 mRNA_2517 0.76 +0.9
339,230 + 10885 mRNA_2517 0.76 -0.7
339,230 - 10885 mRNA_2517 0.76 +2.6
339,234 + 10885 mRNA_2517 0.76 +0.6
339,239 - 10885 mRNA_2517 0.76 +1.2
339,242 - 10885 mRNA_2517 0.77 -0.4
339,243 + 10885 mRNA_2517 0.77 +1.6
339,252 - 10885 mRNA_2517 0.77 +0.2
339,279 + 10885 mRNA_2517 0.78 +1.8
339,367 - 10885 mRNA_2517 0.81 -1.2
339,368 - 10885 mRNA_2517 0.81 +1.3
339,381 - 10885 mRNA_2517 0.82 +0.4
339,491 + 10885 mRNA_2517 0.86 +0.1
339,798 - +0.7
339,909 - -0.2
339,938 + +0.4
339,939 + -0.1
339,942 - +1.6
339,946 - -2.6
339,947 + +1.8
339,951 + -2.2
339,951 - -0.0
339,953 + -1.3
339,959 + -0.4
339,963 + -4.3
340,104 - +0.7
340,112 + +0.3
340,147 + +2.2
340,244 + 10886 mRNA_2518 0.15 +0.1
340,259 + 10886 mRNA_2518 0.16 +0.0
340,408 + 10886 mRNA_2518 0.26 +0.2
340,537 + 10886 mRNA_2518 0.35 +1.5
340,822 - 10886 mRNA_2518 0.54 +0.4
341,406 - +1.4
341,697 - +1.8
341,697 + +0.7
341,703 + -1.6
341,992 + -0.8
342,006 + +0.2
342,029 - -2.1
342,076 - +1.1
342,085 - -0.5
342,087 - +1.9
342,094 + +0.3
342,147 + -0.2
342,165 - +0.2
342,167 + +0.1
342,168 + -0.5
342,179 - +2.5
342,191 - +1.7
342,198 + +0.3
342,214 - +0.3
342,217 - -1.7
342,293 - +0.0
342,298 - -1.2
342,298 - -0.4
342,302 + -1.4
342,302 - +1.1
342,302 + +0.3
342,337 + +0.7
342,341 + +0.2
342,341 + -0.9
342,344 + -0.4
342,355 + -1.6
342,430 + +1.1

Or see this region's nucleotide sequence