Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2534

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10901 and 10902 are separated by 381 nucleotides10902 and 10903 are separated by 22 nucleotides10903 and 10904 are separated by 359 nucleotides mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377,456 to 384,141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384,523 to 387,549 10902 mRNA_2535: 10903 - Hypothetical Protein, at 387,572 to 388,066 10903 mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388,426 to 391,874 10904

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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383,639 - +0.8
383,775 + +0.5
383,796 + -0.6
384,097 - +0.1
384,218 - +1.3
384,234 - -0.0
384,238 + +0.3
384,340 - -0.2
384,379 - -0.6
384,383 - -2.1
384,392 + -0.9
384,441 + -0.5
384,530 - -0.5
384,549 + -0.6
384,865 - 10902 mRNA_2534 0.11 +0.1
385,004 + 10902 mRNA_2534 0.16 -1.2
385,093 - 10902 mRNA_2534 0.19 -0.9
385,430 - 10902 mRNA_2534 0.30 +0.7
385,434 + 10902 mRNA_2534 0.30 -0.3
385,584 + 10902 mRNA_2534 0.35 -0.1
385,692 - 10902 mRNA_2534 0.39 +0.1
385,719 + 10902 mRNA_2534 0.40 +0.1
385,746 + 10902 mRNA_2534 0.40 -0.0
385,830 + 10902 mRNA_2534 0.43 +0.5
385,880 - 10902 mRNA_2534 0.45 +0.2
386,036 + 10902 mRNA_2534 0.50 -0.7
386,115 - 10902 mRNA_2534 0.53 -0.9
386,304 + 10902 mRNA_2534 0.59 -0.2
386,311 + 10902 mRNA_2534 0.59 +0.7
386,339 + 10902 mRNA_2534 0.60 +1.2
386,417 + 10902 mRNA_2534 0.63 +1.8
386,440 - 10902 mRNA_2534 0.63 -0.3
386,729 + 10902 mRNA_2534 0.73 +1.9
386,780 - 10902 mRNA_2534 0.75 +1.6
386,987 - 10902 mRNA_2534 0.81 -1.0
387,087 + 10902 mRNA_2534 0.85 +0.8
387,088 + 10902 mRNA_2534 0.85 +1.4
387,153 + 10902 mRNA_2534 0.87 -1.4
387,167 - 10902 mRNA_2534 0.87 +0.1
387,171 - 10902 mRNA_2534 0.87 -0.6
387,172 + 10902 mRNA_2534 0.88 +0.2
387,174 + 10902 mRNA_2534 0.88 -0.2
387,200 - 10902 mRNA_2534 0.88 +2.7
387,462 + +0.2
387,470 - -0.3
387,479 + +0.1
387,484 + -1.1
387,492 - +0.8
387,608 + +2.9
387,611 - +0.3
387,615 + -0.3
387,623 - 10903 mRNA_2535 0.10 +0.2
387,628 + 10903 mRNA_2535 0.11 +1.5
387,630 - 10903 mRNA_2535 0.12 -1.5
387,637 + 10903 mRNA_2535 0.13 +1.8
387,637 - 10903 mRNA_2535 0.13 +1.7
387,638 - 10903 mRNA_2535 0.13 -2.0
387,639 + 10903 mRNA_2535 0.14 +1.8
387,641 + 10903 mRNA_2535 0.14 -0.7
387,641 - 10903 mRNA_2535 0.14 -0.6
387,642 - 10903 mRNA_2535 0.14 +1.4
387,643 + 10903 mRNA_2535 0.14 +0.1
387,643 - 10903 mRNA_2535 0.14 +0.2
387,644 + 10903 mRNA_2535 0.15 -1.4
387,644 + 10903 mRNA_2535 0.15 -0.8
387,644 + 10903 mRNA_2535 0.15 -0.5
387,644 + 10903 mRNA_2535 0.15 -0.3
387,648 + 10903 mRNA_2535 0.15 +0.4
387,649 - 10903 mRNA_2535 0.16 +0.2
387,650 - 10903 mRNA_2535 0.16 +1.3
387,652 + 10903 mRNA_2535 0.16 -1.2
387,656 + 10903 mRNA_2535 0.17 -1.2
387,658 - 10903 mRNA_2535 0.17 +1.2
387,659 + 10903 mRNA_2535 0.18 +1.0
387,665 - 10903 mRNA_2535 0.19 +0.5
387,670 - 10903 mRNA_2535 0.20 -1.3
387,671 - 10903 mRNA_2535 0.20 -1.2
387,673 + 10903 mRNA_2535 0.20 -0.0
387,675 - 10903 mRNA_2535 0.21 +1.2
387,677 - 10903 mRNA_2535 0.21 -1.2
387,677 - 10903 mRNA_2535 0.21 +1.7
387,678 + 10903 mRNA_2535 0.21 +0.4
387,678 + 10903 mRNA_2535 0.21 -0.9
387,678 + 10903 mRNA_2535 0.21 +1.9
387,684 - 10903 mRNA_2535 0.23 -1.8
387,686 + 10903 mRNA_2535 0.23 +0.1
387,689 + 10903 mRNA_2535 0.24 +1.3
387,695 - 10903 mRNA_2535 0.25 +0.4
387,698 + 10903 mRNA_2535 0.25 +0.6
387,698 - 10903 mRNA_2535 0.25 +0.1
387,719 + 10903 mRNA_2535 0.30 +0.3
387,721 + 10903 mRNA_2535 0.30 -0.5
387,733 + 10903 mRNA_2535 0.33 +1.3
387,749 + 10903 mRNA_2535 0.36 +0.5
387,756 - 10903 mRNA_2535 0.37 +0.8
387,765 - 10903 mRNA_2535 0.39 -0.5
387,783 - 10903 mRNA_2535 0.43 +1.3
387,792 + 10903 mRNA_2535 0.44 -0.4
387,812 + 10903 mRNA_2535 0.48 -0.8
387,819 - 10903 mRNA_2535 0.50 +1.2
387,829 - 10903 mRNA_2535 0.52 +0.9
387,830 - 10903 mRNA_2535 0.52 +0.3
387,832 + 10903 mRNA_2535 0.53 -1.1
387,839 + 10903 mRNA_2535 0.54 -2.4
387,846 + 10903 mRNA_2535 0.55 +1.8
387,857 - 10903 mRNA_2535 0.58 -1.5
387,857 - 10903 mRNA_2535 0.58 +0.1
387,858 - 10903 mRNA_2535 0.58 -1.9
387,873 + 10903 mRNA_2535 0.61 -0.0
387,874 - 10903 mRNA_2535 0.61 -0.1
387,877 - 10903 mRNA_2535 0.62 +0.2
387,880 + 10903 mRNA_2535 0.62 -0.1
387,881 + 10903 mRNA_2535 0.62 +1.6
387,882 + 10903 mRNA_2535 0.63 -0.0
387,885 + 10903 mRNA_2535 0.63 -0.4
387,897 - 10903 mRNA_2535 0.66 -1.8
387,901 + 10903 mRNA_2535 0.66 -0.5
387,901 - 10903 mRNA_2535 0.66 +0.9
387,902 + 10903 mRNA_2535 0.67 +1.0
387,915 + 10903 mRNA_2535 0.69 +2.3
387,945 + 10903 mRNA_2535 0.75 +0.5
388,010 + 10903 mRNA_2535 0.88 -0.7
388,022 + +0.9
388,035 + +0.8
388,037 - -1.5
388,041 - -0.9
388,052 - +0.4
388,056 - -0.8
388,060 + +0.2
388,062 - +0.2
388,062 + +0.3
388,062 - +1.5
388,093 + +0.7
388,186 - +0.2
388,210 + +1.9
388,215 + -0.2
388,229 + -2.4
388,246 + +1.0
388,259 - -1.2
388,278 - +1.5
388,318 - +0.9
388,351 - +0.8
388,360 + +1.0
388,360 + -0.2
388,363 - -0.3
388,368 + -2.4
388,369 - +0.3

Or see this region's nucleotide sequence