Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2575

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10942 and 10943 are separated by 131 nucleotides10943 and 10944 are separated by 72 nucleotides mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477,863 to 478,879 10942 mRNA_2575: 10943 - KOG1022 Acetylglucosaminyltransferase EXT2/exostosin 2, at 479,011 to 480,812 10943 mRNA_2576: 10944 - Hypothetical Protein, at 480,885 to 482,213 10944

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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478,075 - 10942 mRNA_2574 0.21 -0.6
478,231 + 10942 mRNA_2574 0.36 +0.4
478,239 - 10942 mRNA_2574 0.37 +0.4
478,243 + 10942 mRNA_2574 0.37 -2.4
478,243 - 10942 mRNA_2574 0.37 -1.7
478,360 + 10942 mRNA_2574 0.49 +0.1
478,396 + 10942 mRNA_2574 0.52 -1.9
478,809 - -0.1
478,826 - -0.8
478,828 + -2.1
479,074 - +0.2
479,107 + +0.9
479,116 - -1.5
479,120 - -0.4
479,121 - -0.8
479,238 + 10943 mRNA_2575 0.13 +0.7
479,254 - 10943 mRNA_2575 0.13 +0.6
479,367 - 10943 mRNA_2575 0.20 +0.3
479,544 + 10943 mRNA_2575 0.30 -1.2
479,618 - 10943 mRNA_2575 0.34 +0.0
479,981 - 10943 mRNA_2575 0.54 -0.6
480,011 + 10943 mRNA_2575 0.55 -1.2
480,273 - 10943 mRNA_2575 0.70 +0.2
480,276 + 10943 mRNA_2575 0.70 +1.1
480,418 - 10943 mRNA_2575 0.78 -2.6
480,431 - 10943 mRNA_2575 0.79 +0.2
480,441 + 10943 mRNA_2575 0.79 -1.7
480,529 - 10943 mRNA_2575 0.84 -0.2
480,584 - 10943 mRNA_2575 0.87 -0.6
480,659 - -0.8
480,739 - +0.1
480,746 + -0.4
480,749 - +0.4
480,754 - +0.9
480,761 + +2.1
480,811 - +2.5
480,860 + -0.4
480,874 - +0.2
480,879 + -1.2
480,884 + -1.4
480,982 - +1.8
481,038 + 10944 mRNA_2576 0.12 +0.6
481,041 + 10944 mRNA_2576 0.12 +0.2
481,051 + 10944 mRNA_2576 0.12 -1.5
481,131 - 10944 mRNA_2576 0.19 -0.3
481,160 + 10944 mRNA_2576 0.21 -1.9
481,215 + 10944 mRNA_2576 0.25 -0.7
481,234 - 10944 mRNA_2576 0.26 -0.9
481,243 - 10944 mRNA_2576 0.27 -2.3
481,291 + 10944 mRNA_2576 0.31 +1.1
481,298 - 10944 mRNA_2576 0.31 -0.5
481,336 + 10944 mRNA_2576 0.34 -0.8
481,527 - 10944 mRNA_2576 0.48 -1.8

Or see this region's nucleotide sequence