Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2586

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10953 and 10954 are separated by 93 nucleotides mRNA_2585: 10953 - K18167 SDHAF1 succinate dehydrogenase assembly factor 1, at 503,292 to 503,677 10953 mRNA_2586: 10954 - K05765 CFL cofilin, at 503,771 to 504,788 10954

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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502,840 - +1.3
502,840 - +1.1
502,840 - +1.6
502,844 - -0.5
503,258 - -1.9
503,276 + -2.3
503,402 - 10953 mRNA_2585 0.28 +0.4
503,418 + 10953 mRNA_2585 0.33 -2.3
503,691 - -2.2
503,696 - +0.2
504,832 + +1.1
504,968 - -1.3
505,016 + -0.6
505,087 - -2.4
505,102 - +0.8
505,145 + +2.4
505,181 + -0.4
505,315 + -1.9
505,402 - +0.6
505,409 + -0.1
505,412 + -1.6
505,526 + -2.8
505,551 - -0.3
505,587 + +0.7
505,589 - -1.1
505,654 - -0.5
505,671 - +0.4
505,671 - -1.2
505,672 - -0.9
505,687 - +1.4
505,692 - -0.4
505,700 + -1.0
505,710 + +0.3

Or see this region's nucleotide sequence