Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2648

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11015 and 11016 are separated by 315 nucleotides mRNA_2647: 11015 - Hypothetical Protein, at 668,497 to 669,102 11015 mRNA_2648: 11016 - SUPERFAMILY--SSF52058, at 669,418 to 670,426 11016

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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668,538 + +0.6
668,945 - 11015 mRNA_2647 0.74 +3.0
669,110 + +0.9
669,158 - +2.6
669,166 + +1.5
669,289 - +0.2
669,306 + -0.0
669,447 + +0.6
669,594 + 11016 mRNA_2648 0.17 -0.7
669,614 - 11016 mRNA_2648 0.19 -3.1
669,866 + 11016 mRNA_2648 0.44 -0.3
669,876 - 11016 mRNA_2648 0.45 +0.0
669,877 - 11016 mRNA_2648 0.45 -1.3
669,878 + 11016 mRNA_2648 0.46 +1.8
669,881 - 11016 mRNA_2648 0.46 +1.4
669,985 + 11016 mRNA_2648 0.56 -1.7
670,158 + 11016 mRNA_2648 0.73 +0.3
670,167 + 11016 mRNA_2648 0.74 +1.8
670,305 + 11016 mRNA_2648 0.88 +0.8
670,355 + -0.8
670,491 + +1.6
670,621 - +0.8
670,783 + -1.0
670,786 + +0.9
670,787 - +0.3
670,789 - +0.7
670,794 + -1.1
670,863 + -2.3
670,945 - +1.7
670,949 + +0.8
671,095 + -0.0

Or see this region's nucleotide sequence