Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2665

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11033 and 11034 are separated by 357 nucleotides mRNA_2665: 11033 - HMMPfam-Protein of unknown function (DUF3431)-PF11913, at 712,409 to 714,651 11033 mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266 11034

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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711,440 - +0.9
711,444 + -1.1
711,473 + -0.2
711,483 - +1.7
711,483 - +0.0
711,484 + -0.9
711,486 + +0.4
711,487 - -0.1
711,495 + +0.4
711,496 + -1.9
711,500 - +2.9
711,501 - +0.2
711,505 + -1.6
711,505 + +0.9
711,507 - -0.1
711,510 - +1.6
711,520 - -2.1
711,537 + +0.2
711,541 + +0.4
711,592 + +0.8
711,605 + +1.7
711,610 - -0.8
711,623 - +0.1
711,624 - -1.2
711,631 + -0.8
711,645 + -0.8
711,655 + -1.0
711,695 + +0.4
711,734 - +1.4
711,759 + +0.8
711,770 - -0.7
711,775 - +1.4
711,775 - +1.5
711,776 + -0.7
711,779 + +0.1
711,791 + +0.6
711,801 + -1.0
711,801 - -0.4
711,803 + +3.1
711,849 - +1.0
711,922 - +2.8
712,181 - -1.3
712,205 + -1.8
712,223 - -0.0
712,301 - -0.5
712,316 + -3.1
712,338 + -0.1
712,354 - +0.3
712,362 - +0.6
712,649 - 11033 mRNA_2665 0.11 +0.4
712,660 + 11033 mRNA_2665 0.11 -1.3
712,765 - 11033 mRNA_2665 0.16 +0.6
713,671 + 11033 mRNA_2665 0.56 +2.2
713,673 + 11033 mRNA_2665 0.56 +1.4
713,826 - 11033 mRNA_2665 0.63 -0.7
714,658 + -1.6
714,969 + -2.0

Or see this region's nucleotide sequence