Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1 + +0.4
28 + +2.4
28 + -0.0
37 + +0.3
37 + +1.0
38 + -0.0
44 + +0.1
48 - -0.0
49 + -1.8
49 + -0.6
49 + +0.7
49 + -0.8
49 + +0.8
49 + +0.9
49 - -1.2
52 + +0.0
54 - -1.5
54 - +0.2
58 + -0.8
62 + +1.0
70 - +0.2
73 + +0.5
74 - +1.3
74 + -0.5
112 - -0.7
120 - -1.0
138 + +1.6
142 + -1.5
142 + -0.8
142 + -1.5
144 + +0.9
145 - +0.5
147 + -2.6
152 + -1.3
159 + +3.1
159 - -1.9
163 + -2.4
169 - -0.3
170 + +0.3
171 - +0.9
173 + -1.9
175 - -0.1
176 + -2.3
177 + -0.4
183 + -2.3
193 + -0.6
205 + -0.8
231 + +0.6
232 + +1.9
235 - -2.8
252 - -1.2
259 + +0.5
259 + -0.0
259 + +3.0
262 - -1.0
269 + -0.5
273 + -0.6
275 - -0.6
289 + +1.5
299 + +0.8
312 - +0.3
339 + +0.4
352 + -1.2
357 + +0.1
358 + -0.5
368 - +1.0
417 - +0.9
429 + +0.2
434 + +2.4
445 + +2.7
462 + -0.4
462 + +0.9
502 + -1.6
529 - -0.2
540 - -1.6
561 + +1.1
584 + +0.1
584 - +0.2
584 + +1.2
633 + +0.0
636 + -0.4
646 + +0.2
703 - -1.1
736 - -0.3
772 - 11054 mRNA_2686 0.10 -1.1
845 - 11054 mRNA_2686 0.13 -0.3
871 + 11054 mRNA_2686 0.14 +1.7
911 + 11054 mRNA_2686 0.16 +0.1
919 - 11054 mRNA_2686 0.16 +1.3
922 + 11054 mRNA_2686 0.16 -0.7
937 - 11054 mRNA_2686 0.17 -1.0
946 - 11054 mRNA_2686 0.17 +3.7
1,039 + 11054 mRNA_2686 0.21 +1.1
1,042 - 11054 mRNA_2686 0.21 +2.0
1,056 + 11054 mRNA_2686 0.21 +0.5
1,056 + 11054 mRNA_2686 0.21 -0.8
1,059 - 11054 mRNA_2686 0.21 -2.0
1,059 - 11054 mRNA_2686 0.21 +0.5
1,079 + 11054 mRNA_2686 0.22 -0.6
1,089 + 11054 mRNA_2686 0.22 +1.9
1,090 - 11054 mRNA_2686 0.22 -2.8
1,099 - 11054 mRNA_2686 0.23 -0.0
1,116 - 11054 mRNA_2686 0.24 +0.5
1,219 - 11054 mRNA_2686 0.28 -0.1
1,230 + 11054 mRNA_2686 0.28 -0.7
1,258 - 11054 mRNA_2686 0.29 +0.1
1,270 - 11054 mRNA_2686 0.29 +2.2
1,272 + 11054 mRNA_2686 0.30 +2.2
1,324 + 11054 mRNA_2686 0.32 -0.6
1,351 + 11054 mRNA_2686 0.33 -3.1
1,464 + 11054 mRNA_2686 0.37 +0.2
1,508 + 11054 mRNA_2686 0.39 -1.4
1,514 - 11054 mRNA_2686 0.39 -0.9
1,611 + 11054 mRNA_2686 0.43 +1.6
1,642 + 11054 mRNA_2686 0.44 +0.9
1,671 + 11054 mRNA_2686 0.45 -1.1
1,680 + 11054 mRNA_2686 0.45 +1.1
1,683 - 11054 mRNA_2686 0.46 -0.4
1,684 + 11054 mRNA_2686 0.46 +1.1
1,699 + 11054 mRNA_2686 0.46 +1.9
1,836 + 11054 mRNA_2686 0.51 +2.9
1,912 + 11054 mRNA_2686 0.54 +2.3
1,961 - 11054 mRNA_2686 0.56 +0.6
2,068 - 11054 mRNA_2686 0.60 -2.5
2,071 - 11054 mRNA_2686 0.61 +0.8
2,079 + 11054 mRNA_2686 0.61 -0.4
2,096 - 11054 mRNA_2686 0.62 -1.2
2,112 + 11054 mRNA_2686 0.62 +0.1
2,128 + 11054 mRNA_2686 0.63 +0.4
2,140 + 11054 mRNA_2686 0.63 -0.3
2,141 - 11054 mRNA_2686 0.63 -1.1
2,158 + 11054 mRNA_2686 0.64 +0.7
2,196 + 11054 mRNA_2686 0.65 -0.2
2,238 + 11054 mRNA_2686 0.67 +0.4
2,250 - 11054 mRNA_2686 0.67 -0.4
2,271 + 11054 mRNA_2686 0.68 -0.4
2,404 - 11054 mRNA_2686 0.73 +0.2
2,419 + 11054 mRNA_2686 0.74 -0.8
2,442 - 11054 mRNA_2686 0.75 +2.5
2,444 - 11054 mRNA_2686 0.75 -1.5
2,534 - 11054 mRNA_2686 0.79 -1.1
2,547 - 11054 mRNA_2686 0.79 +0.1
2,564 + 11054 mRNA_2686 0.80 -0.1
2,685 - 11054 mRNA_2686 0.84 +1.0
2,806 + 11054 mRNA_2686 0.89 -1.2
2,806 - 11054 mRNA_2686 0.89 -0.6
2,814 - 11054 mRNA_2686 0.89 -1.4
2,938 + -0.1
2,971 + -0.8
2,984 - +0.1
3,056 - -1.0
3,090 + -2.1
3,127 + +2.6
3,135 - -0.5
3,141 + +2.9
3,282 + +0.5
3,380 + -0.9
3,409 - +0.3

Or see this region's nucleotide sequence