Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2687

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11054 and 11055 are separated by 595 nucleotides11055 and 11056 are separated by 537 nucleotides mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3,087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3,683 to 8,144 11055 mRNA_2688: 11056 - Hypothetical Protein, at 8,682 to 9,968 11056

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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2,685 - 11054 mRNA_2686 0.84 +1.0
2,806 + 11054 mRNA_2686 0.89 -1.2
2,806 - 11054 mRNA_2686 0.89 -0.6
2,814 - 11054 mRNA_2686 0.89 -1.4
2,938 + -0.1
2,971 + -0.8
2,984 - +0.1
3,056 - -1.0
3,090 + -2.1
3,127 + +2.6
3,135 - -0.5
3,141 + +2.9
3,282 + +0.5
3,380 + -0.9
3,409 - +0.3
8,187 - -0.4
8,190 - -1.5
8,203 + -1.2
8,306 - +1.2
8,314 - +0.5
8,316 + +0.6
8,317 + +1.8
8,445 + -0.8
8,455 + -0.4
8,459 - -1.3
8,473 - +1.9
8,478 + +1.1
8,604 - +2.7
8,709 - +0.2
8,754 + +0.4

Or see this region's nucleotide sequence