Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2709

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11076 and 11077 are separated by 133 nucleotides11077 and 11078 are separated by 596 nucleotides mRNA_2708: 11076 - Hypothetical Protein, at 52,159 to 52,641 11076 mRNA_2709: 11077 - Hypothetical Protein, at 52,775 to 54,075 11077 mRNA_2710: 11078 - BLAST putative protein (N-terminal fragment) [Melanopsichiu..., at 54,672 to 56,113 11078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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51,926 + -0.3
51,928 + -0.4
51,964 + +0.1
51,964 + +0.1
52,085 - +1.3
52,087 + +2.5
52,379 - 11076 mRNA_2708 0.46 +1.1
52,503 - 11076 mRNA_2708 0.71 +1.4
52,981 - 11077 mRNA_2709 0.16 +1.4
52,988 + 11077 mRNA_2709 0.16 -1.3
52,990 + 11077 mRNA_2709 0.17 -1.1
53,108 - 11077 mRNA_2709 0.26 -0.4
53,232 + 11077 mRNA_2709 0.35 -0.4
53,556 - 11077 mRNA_2709 0.60 -2.6
53,693 + 11077 mRNA_2709 0.71 +1.0
53,754 + 11077 mRNA_2709 0.75 +1.4
53,989 - -1.0
54,277 + +0.2
54,287 + -0.0
54,291 - -1.1
54,299 + -1.2
54,421 - -0.3
54,473 - +1.3
54,563 - +0.4
54,566 - +0.1
54,567 + +0.7
54,572 + +0.1
54,582 + +0.4
54,595 - +1.0
55,036 - 11078 mRNA_2710 0.25 -0.0
55,074 - 11078 mRNA_2710 0.28 +0.8

Or see this region's nucleotide sequence