Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2732

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11100 and 11101 are separated by 209 nucleotides mRNA_2732: 11100 - Hypothetical Protein, at 95,429 to 95,692 11100 mRNA_2733: 11101 - KOG0254 Predicted transporter (major facilitator superfamily), at 95,902 to 98,475 11101

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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94,445 + -0.5
94,462 - +1.9
95,055 + +1.0
95,164 - +0.6
95,167 - +1.7
95,169 + +0.6
95,177 + +0.2
95,190 + -0.4
95,247 + -0.6
95,285 - +0.7
95,352 + +1.9
95,461 + 11100 mRNA_2732 0.12 +0.0
95,497 - 11100 mRNA_2732 0.26 +1.2
95,508 - 11100 mRNA_2732 0.30 -0.2
95,513 + 11100 mRNA_2732 0.32 +0.4
95,525 + 11100 mRNA_2732 0.36 +2.0
95,539 - 11100 mRNA_2732 0.42 +2.0
95,552 + 11100 mRNA_2732 0.47 +0.3
95,688 - +0.6
95,692 + +0.6
95,707 + -0.9
95,710 + +0.1
95,765 - -1.4
95,891 - -0.2
95,941 - +0.2
96,187 - 11101 mRNA_2733 0.11 -0.9
96,190 - 11101 mRNA_2733 0.11 +2.1
96,215 - 11101 mRNA_2733 0.12 +0.4
96,682 + 11101 mRNA_2733 0.30 -2.1

Or see this region's nucleotide sequence